Open-source tools built for the life sciences community
Install-ready R packages on CRAN, free for research and teaching.
dbparser package aims to parse different public drugs databases into a single and unified format R object called dvobject (stands for drugverse object). Also, dbparser has evolved into an integration engine, allowing you to merge mechanistic data (DrugBank) with real-world phenotypic data (OnSIDES) and drug-drug interaction risks (TWOSIDES).
Pre-parsed DrugBank datasets focused on COVID-19 potential treatment drugs, ready for analysis in R. Provides tibbles on drug targets, pathways, and mechanisms extracted via dbparser. A curated subset of the dbdataset limited to DrugBank's COVID-19 page.
Frameworks and visualization projects we steward for the community.
periscope2 is a scalable and UI-standardized 'shiny' framework including a variety of developer convenience functions with the goal of both streamlining robust application development and assisting in creating a consistent user experience regardless of application or developer.
This open-source project pairs a standalone JavaScript visualization library with an R package available on CRAN. It provides interactive plots for genomics, clinical research, and other high-dimensional scientific data, tracks data and end-user modifications for full reproducibility, embeds seamlessly into Shiny and R Markdown workflows, and can convert ggplot2 figures into live interactive charts.